22.3 Molecular biology techniques in cell research
4 min read•july 22, 2024
and recombinant DNA techniques are game-changers in cell biology. They let scientists copy, modify, and study DNA with incredible precision. These tools have revolutionized everything from gene discovery to protein production.
and take things even further. By turning genes off or measuring their activity, researchers can unravel complex cellular processes. It's like having a molecular Swiss Army knife for cell biology experiments.
Polymerase Chain Reaction (PCR) and DNA Amplification
Principles of PCR amplification
Top images from around the web for Principles of PCR amplification
Visualizing and Characterizing DNA, RNA, and Protein | Microbiology View original
Is this image relevant?
File:PCR Steps.JPG - Wikimedia Commons View original
Is this image relevant?
10.1 Cloning and Genetic Engineering – Concepts of Biology-1st Canadian Edition View original
Is this image relevant?
Visualizing and Characterizing DNA, RNA, and Protein | Microbiology View original
Is this image relevant?
File:PCR Steps.JPG - Wikimedia Commons View original
Is this image relevant?
1 of 3
Top images from around the web for Principles of PCR amplification
Visualizing and Characterizing DNA, RNA, and Protein | Microbiology View original
Is this image relevant?
File:PCR Steps.JPG - Wikimedia Commons View original
Is this image relevant?
10.1 Cloning and Genetic Engineering – Concepts of Biology-1st Canadian Edition View original
Is this image relevant?
Visualizing and Characterizing DNA, RNA, and Protein | Microbiology View original
Is this image relevant?
File:PCR Steps.JPG - Wikimedia Commons View original
Is this image relevant?
1 of 3
PCR amplifies specific DNA sequences by producing millions of copies of a target DNA sequence from a small initial sample
Requires several components including with target sequence, two complementary to 5' ends of target sequence on each strand, (Taq polymerase) for DNA synthesis, (dNTPs) as building blocks for new DNA strands, and to maintain optimal conditions for DNA polymerase
Involves three main steps repeated in cycles:
: High temperature (94-96°C) separates double-stranded DNA template into single strands
: Lower temperature (50-65°C) allows primers to bind to complementary sequences on single-stranded DNA
: Temperature raised (72°C) to optimize DNA polymerase activity, synthesizing new DNA strands complementary to template
Number of target DNA sequences doubles with each cycle resulting in
Applications of PCR in cell biology research
Amplifies specific genes or DNA sequences for cloning or sequencing (, )
Detects presence of specific DNA sequences for or identifying pathogens (, )
Quantifies amount of a specific DNA sequence in a sample using or (gene expression analysis, viral load monitoring)
Recombinant DNA Technology
Techniques for recombinant DNA construction
Restriction enzymes cut DNA at specific recognition sequences resulting in blunt ends or sticky ends with short overhangs (EcoRI, BamHI)
DNA ligation joins two DNA fragments together catalyzed by forming a phosphodiester bond between 3' hydroxyl group of one fragment and 5' phosphate group of another, with sticky ends facilitating ligation of specific fragments
Cloning inserts a DNA fragment of interest into a that can replicate independently of host genome (plasmids, ), with vector and fragment cut by same restriction enzyme(s) to generate compatible ends for ligation, then introduced into host cell (bacteria, eukaryotic cells) for replication and expression
Applications of recombinant DNA in cell biology research
Produces large quantities of specific proteins by cloning corresponding gene into an expression vector (insulin production, enzyme manufacturing)
Generates transgenic organisms or cell lines with altered gene expression for functional studies (knockout mice, genetically modified crops)
Studies effects of specific mutations or modifications on gene function by introducing engineered DNA sequences into cells (site-directed mutagenesis, reporter gene assays)
Gene Silencing and Genome Editing
Applications of RNAi and CRISPR-Cas9
inhibits gene expression by targeting specific mRNAs for degradation using () or () incorporated into () that cleaves complementary mRNA sequences
Studies effects of gene knockdown on cellular processes and identifies gene functions (loss-of-function screens, pathway analysis)
is a genome editing tool adapted from bacterial immune system using () to direct Cas9 to create at specific genome locations, with cell's DNA repair mechanisms ( or ) harnessed to introduce specific mutations or insertions at target site
Generates or organisms to study effects of gene loss on cellular processes (disease modeling, functional genomics)
Introduces specific mutations or modifications into genes to study their function (, precise gene editing)
Performs to identify genes involved in specific biological processes (drug target discovery, genetic interactions)
Gene Expression Analysis
Methods for gene expression analysis
purifies RNA from biological samples by lysing cells or tissues in presence of RNase inhibitors, separating RNA from DNA and proteins using or , and treating with to remove genomic DNA contamination
synthesizes () from RNA template using (RNA-dependent DNA polymerase) with that anneal to poly(A) tails of eukaryotic mRNAs or random hexamer primers, producing cDNA for subsequent PCR amplification or other downstream applications
Quantitative real-time PCR (qRT-PCR) measures abundance of specific RNA transcripts using cDNA from reverse transcription as template, monitoring amplification of target sequence in real-time with fluorescent dyes or probes, and comparing amplification curves of target gene to reference gene (housekeeping gene) to quantify relative gene expression levels
Compares gene expression levels between different samples or conditions (treated vs untreated, diseased vs healthy)
Validates results obtained from other gene expression analysis methods like microarrays or RNA sequencing
Studies effects of various treatments or perturbations on gene expression (drug response, environmental stress)